FY07-09 proposal 200709000

Jump to Reviews and Recommendations

Section 1. Administrative

Proposal titleEffects of the marine environment on the growth and survival of Columbia Basin spring Chinook and sockeye salmon stocks.
Proposal ID200709000
OrganizationColumbia River Inter-Tribal Fish Commission (CRITFC)
Short descriptionThis project will examine the role of marine growth, as measured by scale imcrement data, in controlling the survival of Columbia Basin spring chinook and sockeye salmon.
Information transferAnnual reports and a final report will summarize data and analyses. Digitized scale images used in this study will be available to other researchers. We also expect to publish a journal article describing results.
Proposal contact person or principal investigator
Contacts
ContactOrganizationEmail
Form submitter
Jeffrey Fryer Columbia River Inter-Tribal Fish Commission [email protected]
All assigned contacts
Jeffrey Fryer Columbia River Inter-Tribal Fish Commission [email protected]
Jeffrey Fryer Columbia River Inter-Tribal Fish Commission [email protected]
Jeffrey Fryer Columbia River Inter-Tribal Fish Commission [email protected]

Section 2. Locations

Province / subbasin: Mainstem/Systemwide / Systemwide

LatitudeLongitudeWaterbodyDescription

Section 3. Focal species

primary: Chinook Mid-Columbia River Spring ESU
primary: Chinook Snake River Spring/Summer ESU
primary: Chinook Upper Columbia River Spring ESU
secondary: Sockeye All Populations

Section 4. Past accomplishments

YearAccomplishments

Section 5. Relationships to other projects

Funding sourceRelated IDRelated titleRelationship
Other: Pacific Salmon Commission [no entry] Age and length-at-age composition of adult chinook and sockeye salmon passing Bonneville Dam The proposed project will use scale samples and data collected by the PSC-funded project.

Section 6. Biological objectives

Biological objectivesFull descriptionAssociated subbasin planStrategy
Determine influence of ocean conditions on growth Determine whether the influence of ocean conditions on fish growth, as measured in scales, can be used to refine our understanding of the variability in Columbia Basin sockeye and spring Chinook salmon production. None [Strategy left blank]

Section 7. Work elements (coming back to this)

Work element nameWork element titleDescriptionStart dateEnd dateEst budget
Manage and Administer Projects Project administration Administer project 10/1/2006 2/28/2009 $2,621
Biological objectives
Determine influence of ocean conditions on growth
Metrics
Produce/Submit Scientific Findings Report Final report Produce a FY 2007 annual report as well as a final report and write journal article 11/1/2008 2/28/2009 $8,755
Biological objectives
Determine influence of ocean conditions on growth
Metrics
Produce/Submit Scientific Findings Report Quarterly reports Produce quarterly milestone reports 12/1/2006 2/28/2009 $2,621
Biological objectives
Determine influence of ocean conditions on growth
Metrics
Analyze/Interpret Data Compare scale growth patterns to escapement levels, age structure, and measures of ocean climate and productivity Linear models will be used to separate age, environmental, and age-environmental effects using scale measurements among species and years. This will be correlated with measures of ocean condition, age distribution, and abundance. The goal is to provide a framework for hypothesis testing to better understand the role of ocean conditions in the marine survival of salmon. 2/1/2007 11/30/2008 $21,017
Biological objectives
Determine influence of ocean conditions on growth
Metrics
Collect/Generate/Validate Field and Lab Data Measure ocean growth of Columbia River spring chinook and sockeye salmon as reflected in scales Scales will be collected, selected for digitizing, digitized, and circuli measured from focus to the outer end of the scale. 10/1/2006 7/31/2008 $99,561
Biological objectives
Determine influence of ocean conditions on growth
Metrics
Primary R, M, and E Type: Measure approximately 15,000 scales
Disseminate Raw/Summary Data and Results Disseminate data and results Digital images of scales will be made available to other researchers. Summary data and results will be disseminated in annual reports and a final report as well as journal article 9/1/2007 2/28/2009 $3,562
Biological objectives
Determine influence of ocean conditions on growth
Metrics

Section 8. Budgets

Itemized estimated budget
ItemNoteFY07FY08FY09
Personnel 1.4 FTE (total) $26,281 $28,604 $5,106
Fringe Benefits [blank] $8,279 $9,010 $1,608
Travel Obtain scales from other collections, collaborate with Dr. Friedland, present results at professional conference $200 $3,000 $0
Other Contract with Dr. Kevin Friedland, NOAA $6,500 $3,500 $0
Supplies Upgraded scale system and supplies $12,200 $0 $0
Overhead Indirect $16,859 $14,580 $2,410
Totals $70,319 $58,694 $9,124
Total estimated FY 2007-2009 budgets
Total itemized budget: $138,137
Total work element budget: $138,137
Cost sharing
Funding source/orgItem or service providedFY 07 est value ($)FY 08 est value ($)FY 09 est value ($)Cash or in-kind?Status
Totals $0 $0 $0

Section 9. Project future

FY 2010 estimated budget: $0
FY 2011 estimated budget: $0
Comments:

Future O&M costs:

Termination date: 02/28/2009
Comments: If this project is successful, we will pursue funding to update this work on an annual basis for sockeye salmon and spring chinook salmon. We would likely write a new proposal to duplicate this work using summer and fall chinook salmon

Final deliverables: A final report and a journal article.

Section 10. Narrative and other documents


Reviews and recommendations

FY07 budget FY08 budget FY09 budget Total budget Type Category Recommendation
NPCC FINAL FUNDING RECOMMENDATIONS (Oct 23, 2006) [full Council recs]
$0 $0 $0 $0 Expense Basinwide Do Not Fund
NPCC DRAFT FUNDING RECOMMENDATIONS (Sep 15, 2006) [full Council recs]
$0 $0 $0 $0 Basinwide

ISRP PRELIMINARY REVIEW (Jun 2, 2006)

Recommendation: Not fundable

NPCC comments: The research proposed is to determine the relation between marine growth and survival of Columbia Basin spring Chinook and sockeye salmon, as estimated by scale readings, and the age structure, escapement, and ocean conditions. In general, this is a proposal that might have received a strong recommendation for funding 5 to 10 years ago, but the science has progressed beyond what is proposed. Age and growth data are measurable objectives that tie in well with subbasin and provincial plans, but more detailed information should have been provided on this aspect. In a sense, this proposal, which would look at scales from almost 20 years, is a retrospective monitoring study and would provide data on changes in ages and growth of returning salmon. Decadal and interdecadal trends may be apparent, as they have in survivals of some stocks. The proposed project has the potential to provide significant benefits over the long term; however, the information provided in most sections of the narrative was insufficient for reviewers to adequately evaluate the scientific merits of the proposed research. This proposal appears to have been hastily prepared with justification missing. The scientific literature review is incomplete, given the numerous papers available on scale analyses as a method for investigating freshwater and marine survival of Pacific salmon (going back to the early 1900s). Many statements are not supported by citations to the scientific literature, e.g., "Ocean entry is easily recognized on scales." The literature on interannual differences in marine distribution of salmon was not covered. The methods proposed would likely not provide robust answers to the proponent's questions because the samples of fish scales collected at Bonneville Dam or in ocean fisheries will include salmon from different stocks with different origins, migration patterns, and ocean entry times. For example, the proponents will only differentiate hatchery from wild fish -- on the basis of adipose clips (but not all hatchery Chinook are clipped) or interpretation of scale growth patterns, which may not be completely reliable. Coded-wire tag recovery data and genetic data have shown that different stocks of Columbia River Chinook salmon can have different migration speeds and ocean residence locations. This may confound analyses of ocean factors with growth or survival unless basin-scale factors affect growth and survival. The justification for measuring circuli spacing is not adequate, as circuli spacing and number are related to growth of fish. Distances along a common axis from ocean entry to each of the annuli would seem the best measure of growth for different year classes. The correlative analysis with the PDO data is weakly described and will be difficult to interpret because the distribution of salmon in the ocean has changed from year to year over the time the scales were collected. Therefore, linking water masses and salmon survival based on the scale work will be problematic. As they state, the study might be useful in forecasting spring Chinook and sockeye run sizes. It might be possible with new DNA methods to use original scale samples to identify the stock of origin of individual fish in the Bonneville mixtures, but this method is not proposed. The information gained from scale analysis of freshwater growth in various subbasins would be useful but cannot be considered separately as the proposal is written. The proposal only briefly describes the work's relationship to other projects, and there is little evidence of integration with other programs, e.g., oceanographic studies. The PIs are highly qualified to perform this study, and both have an excellent record of publications in the field of scale pattern analysis; however, FTE/hours committed by Friedland to this project were not provided. It is not clear from the narrative who will actually measure the scales, and whether sufficient time and funding has been allocated to complete this major task. The costs of the new digitizing equipment and software are not described in the narrative. Good plans for publication of scientific information and posting of data on the StreamNet website were provided.


ISRP FINAL REVIEW (Aug 31, 2006)

Recommendation: Not fundable

NPCC comments: The research proposed is to determine the relation between marine growth and survival of Columbia Basin spring Chinook and sockeye salmon, as estimated by scale readings, and the age structure, escapement, and ocean conditions. In general, this is a proposal that might have received a strong recommendation for funding 5 to 10 years ago, but the science has progressed beyond what is proposed. Age and growth data are measurable objectives that tie in well with subbasin and provincial plans, but more detailed information should have been provided on this aspect. In a sense, this proposal, which would look at scales from almost 20 years, is a retrospective monitoring study and would provide data on changes in ages and growth of returning salmon. Decadal and interdecadal trends may be apparent, as they have in survivals of some stocks. The proposed project has the potential to provide significant benefits over the long term; however, the information provided in most sections of the narrative was insufficient for reviewers to adequately evaluate the scientific merits of the proposed research. This proposal appears to have been hastily prepared with justification missing. The scientific literature review is incomplete, given the numerous papers available on scale analyses as a method for investigating freshwater and marine survival of Pacific salmon (going back to the early 1900s). Many statements are not supported by citations to the scientific literature, e.g., "Ocean entry is easily recognized on scales." The literature on interannual differences in marine distribution of salmon was not covered. The methods proposed would likely not provide robust answers to the proponent's questions because the samples of fish scales collected at Bonneville Dam or in ocean fisheries will include salmon from different stocks with different origins, migration patterns, and ocean entry times. For example, the proponents will only differentiate hatchery from wild fish -- on the basis of adipose clips (but not all hatchery Chinook are clipped) or interpretation of scale growth patterns, which may not be completely reliable. Coded-wire tag recovery data and genetic data have shown that different stocks of Columbia River Chinook salmon can have different migration speeds and ocean residence locations. This may confound analyses of ocean factors with growth or survival unless basin-scale factors affect growth and survival. The justification for measuring circuli spacing is not adequate, as circuli spacing and number are related to growth of fish. Distances along a common axis from ocean entry to each of the annuli would seem the best measure of growth for different year classes. The correlative analysis with the PDO data is weakly described and will be difficult to interpret because the distribution of salmon in the ocean has changed from year to year over the time the scales were collected. Therefore, linking water masses and salmon survival based on the scale work will be problematic. As they state, the study might be useful in forecasting spring Chinook and sockeye run sizes. It might be possible with new DNA methods to use original scale samples to identify the stock of origin of individual fish in the Bonneville mixtures, but this method is not proposed. The information gained from scale analysis of freshwater growth in various subbasins would be useful but cannot be considered separately as the proposal is written. The proposal only briefly describes the work's relationship to other projects, and there is little evidence of integration with other programs, e.g., oceanographic studies. The PIs are highly qualified to perform this study, and both have an excellent record of publications in the field of scale pattern analysis; however, FTE/hours committed by Friedland to this project were not provided. It is not clear from the narrative who will actually measure the scales, and whether sufficient time and funding has been allocated to complete this major task. The costs of the new digitizing equipment and software are not described in the narrative. Good plans for publication of scientific information and posting of data on the StreamNet website were provided.