FY07-09 proposal 200717700

Jump to Reviews and Recommendations

Section 1. Administrative

Proposal titleProtecting wild steelhead populations by minimizing the behavioral differences between hatchery and wild populations.
Proposal ID200717700
OrganizationNorthwest Fisheries Science Center
Short descriptionA research program to determine the behavioral differences in wild and integrated hatchery steelhead populations, identify mechanisms that cause differences between populations, determine their consequences, and inform science-based hatchery reforms.
Information transferThe results of the proposed research will be delivered to the BPA in annual reports, published in peer reviewed scientific journals, and presented to fisheries and hatchery managers at regional and national scientific meetings.
Proposal contact person or principal investigator
Contacts
ContactOrganizationEmail
Form submitter
Christopher Tatara NOAA, Northwest Fisheries Science Center [email protected]
All assigned contacts
Christopher Tatara NOAA, Northwest Fisheries Science Center [email protected]
Christopher Tatara NOAA, Northwest Fisheries Science Center [email protected]

Section 2. Locations

Province / subbasin: Mainstem/Systemwide / Systemwide

LatitudeLongitudeWaterbodyDescription
46:00:44.172N 122:48:14.011W stream and hatchery Kalama Falls Hatchery, Box 3900 Kalama River Road, Kalama, WA 98625
47:34:8.958N 122:33:17.654W laboratory Northwest Fisheries Science Center, Manchester Research Station, 7305 Beach Dr. East, Port Orchard WA 98366

Section 3. Focal species

primary: Steelhead Lower Columbia River ESU
secondary: Steelhead All Populations

Section 4. Past accomplishments

YearAccomplishments

Section 5. Relationships to other projects

Funding sourceRelated IDRelated titleRelationship
BPA 198805307 Hood R Prod O&M - WS/ODFW BPA funded Parkdale hatchery producing winter and summer steelhead. Results of this research would be applicable to guiding hatchery reform at this location to improve juvenile fitness and reproductive success of hatchery steelhead spawning naturally.
BPA 198903500 Umatilla Hatchery O&M - ODFW BPA funded Umatilla hatchery producing summer steelhead. Results of this research would be applicable to guiding hatchery reform at this location to improve juvenile fitness and reproductive success of hatchery steelhead spawning naturally.
Other: Corps of Engineers n/a John Day, Dworshak, Willamette Mitigation Funding for the Willamette River hatcheries is provided by BPA through a direct funding agreement with the U.S. Army Corps of Engineers. The Cole Rivers Hatchery, Dworshak NFH, and South Santiam Hatchery produce steelhead trout. Results of this research would be applicable to guiding hatchery reform at these locations to improve juvenile fitness and reproductive success of hatchery steelhead spawning naturally.
Other: USFWS n/a Lower Snake River Compensation Plan The Lower Snake River Compensation Program which supports numerous hatcheries on the Snake River that are operated by the U.S. Fish and Wildlife Service through reimbursable funding from BPA. The Clearwater Hatchery, Magic Valley Hatchery, Hagerman NFH, Irrigon Hatchery, and Lyons Ferry Hatchery produce steelhead trout. Results of this research would be applicable to guiding hatchery reform at these locations to improve juvenile fitness and reproductive success of hatchery steelhead spawning naturally.
Other: Bureau of Reclamation n/a Grand Coulee Dam Mitigation The Grand Coulee Dam Mitigation Program supports the Leavenworth Complex consisting of 3 hatcheries that are operated by the Bureau of Reclamation through reimbursable funding from BPA. The Winthrop NFH produces steelhead trout. Results of this research would be applicable to guiding hatchery reform at this location to improve juvenile fitness and reproductive success of hatchery steelhead spawning naturally.
Other: NOAA n/a Mitchell Act hatcheries NOAA Fisheries funds several hatchery programs in the Columbia River Basin through the Mitchell Act using appropriated funds. ODFW operates the Big Creek, Bonneville, and Clackamas hatcheries. USFWS operates the Eagle Creek NFH. WDFW operates the Kalama Falls, North Toutle, Elochoman, Ringold, and Skamania hatcheries. All these hatchery programs produce steelhead trout. Results of this research would be applicable to guiding hatchery reform at these locations to improve juvenile fitness and reproductive success of hatchery steelhead spawning naturally. This research would be directly applicable to evaluating and implementing hatchery reforms on winter steelhead at the Kalama Falls hatchery, where our integrated hatchery and wild populations will be obtained.

Section 6. Biological objectives

Biological objectivesFull descriptionAssociated subbasin planStrategy
Maximize fitness & reproductive success We will conduct experiments to quantify the effects of behavioral type and hatchery rearing environment on 1) survival and migratory behavior of winter steelhead smolts from a genetically integrated hatchery, and 2) reproductive behavior and success of hatchery steelhead spawning naturally in an experimental stream channel. We will test the following 4 hypotheses: 1) Outmigration rates, activity levels, residualism rates, and survival of released hatchery steelhead smolts possessing different behavioral types will not differ. 2) Hatchery rearing environment and an individual’s behavioral type has no effect on reproductive behavior of hatchery steelhead spawning naturally. 3) An individual’s behavior as a juvenile is not correlated with their spawning behavior as an adult. 4) Adult-to-parr reproductive success is not affected by behavioral type or early rearing environment. The methods are detailed in section 10. The results will be used to guide science-based hatchery reform in the Columbia River Basin. None This is a Systemwide proposal - relevant strategies are not available. This objective has basinwide relevance and addresses questions described in the NWPCC Draft Research Plan, the 2000 Council Fish and Wildlife Program, and the 2004 FCRPS BiOP.
Minimize behavioral differences We will conduct a series of behavioral experiments on winter steelhead from a genetically integrated hatchery and its corresponding wild population designed to preserve behavioral variation & minimize behavioral differences between hatchery and wild populations. We will test the following 4 hypotheses: 1) No difference in means or variation in behavioral responses between integrated hatchery and wild populations raised in common environment. 2) Behavioral type of hatchery or wild individuals does not predict growth or survival in the hatchery. 3) In any given hatchery or wild individual, behavioral responses are not correlated. 4) Hatchery rearing environment does not affect the mean or variation for any behavioral variable tested. The methods are detailed in section 10. The results will be used to guide science-based hatchery reform in the Columbia River Basin. None This is a Systemwide proposal - relevant strategies are not available. This objective has basinwide relevance and addresses questions described in the NWPCC Draft Research Plan, the 2000 Council Fish and Wildlife Program, and the 2004 FCRPS BiOP.

Section 7. Work elements (coming back to this)

Work element nameWork element titleDescriptionStart dateEnd dateEst budget
Produce Hatchery Fish Establish and maintain research populations of winter run steelhead. We will conduct research on winter run steelhead trout from the Kalama River, a tributary to the lower Columbia River. We will establish research populations at the NWFSC, Manchester Research Station (Kitsap County, WA) using genetically integrated hatchery and wild broodstock collected at the Washington Department of Fish and Wildlife’s (WDFW) Kalama Falls Hatchery. Collection of gametes to establish our research populations will occur in FY 2007 with the assistance of WDFW personnel once appropriate collection and transfer permits are obtained from the WDFW and an Endangered Species Act section 10 take permit is obtained from the National Marine Fisheries Service (NMFS). We will raise the steelhead from eyed-egg stage to sexual maturity at the Manchester Research Station. Further details are available in section 10. 1/1/2007 12/31/2009 $83,633
Biological objectives
Minimize behavioral differences
Metrics
* Broodstock collection: # of non-clip (natural origin) fish: up to 40
* Broodstock collection: # of ad-clip (hatchery origin) fish : up to 40
Mark/Tag Animals Apply unique marks to identify individual steelhead We will employ a variety of marking techniques to identify individual steelhead in our experiments including nontoxic paint marks, HDX PIT tags, PIT tags, Peterson disk tags, and adipose fin clips. Further details are available in section 10. 5/1/2007 12/31/2009 $56,601
Biological objectives
Minimize behavioral differences
Metrics
Focal Area: Hatchery, Systemwide
Primary R, M, and E Type: Uncertainties Research
Collect/Generate/Validate Field and Lab Data Conduct experiments to quantify behavioral variation, detect correlations between behaviors, determine temporal stability of behaviors in individuals, and determine genetic and environmental mechanisms affecting behavioral variation in .............. We will collect the data needed to test the four null hypotheses stated in Objective 1 (Minimize behavioral difference...) using the experimental approaches, methods, and designs described in detail in section 10. 2/1/2007 12/31/2008 $102,327
Biological objectives
Minimize behavioral differences
Metrics
Primary R, M, and E Type: Uncertanties Research
Focal Area: Hatchery, Systemwide
Analyze/Interpret Data Conduct statistical analyses on (1) differences in behavioral response between hatchery and wild populations - genetic effects (2) differences in behavioral responses between rearing environments – environmental effects (3) temporal stability ............ We will analyze the data collected and test the four hypotheses presented in Objective 1 (Minimize behavioral differences) using the statistical methods described in detail in section 10. We will interpret our results to make recommendations for hatchery reform. 6/1/2007 12/31/2009 $138,536
Biological objectives
Minimize behavioral differences
Metrics
Focal Area: Hatchery, Systemwide
Primary R, M, and E Type: Uncertainties Research
Collect/Generate/Validate Field and Lab Data Conduct experiments to determine whether behavioral type affects hatchery steelhead smolts upon release, and reproductive behavior and success of hatchery steelhead spawning naturally. We will collect the data needed to test the four null hypotheses stated in Objective 2 (Maximize fitness of...) using the experimental approaches, methods, and designs described in detail in section 10. 6/1/2007 12/31/2009 $168,551
Biological objectives
Maximize fitness & reproductive success
Metrics
Focal Area: Hatchery, Systemwide
Primary R, M, and E Type: Uncertainties Research
Analyze/Interpret Data Conduct statistical analyses on (1) effects of behavioral type on post-release survival and migratory behavior of hatchery steelhead smolts, and (2) effects of early rearing environment and behavioral type on hatchery steelhead reproductive success. We will analyze the data collected and test the four hypotheses presented in Objective 2 (Maximize fitness & reproductive success) using the statistical methods described in detail in section 10. We will interpret our results to make recommendations for hatchery reform. 3/1/2008 12/31/2009 $132,115
Biological objectives
Maximize fitness & reproductive success
Metrics
Focal Area: Hatchery, Systemwide
Primary R, M, and E Type: Uncertainties Research
Produce/Submit Scientific Findings Report Produce Manuscripts for Scientific Journals and Annual Reports Manuscripts will be prepared and submitted for publication in appropriate peer-reviewed scientific journals after the analysis of data is complete. We expect to submit the first manuscript(s) in FY 2008, and to produce one to two manuscripts for peer-reviewed publication in scientific journals on an annual basis. We will approach the discussion of our results in a hatchery reform framework, so that the results of the proposed research can be used by fisheries scientists and hatchery managers to evaluate and implement science-based hatchery reform measures. We expect that our results will explain 1) if and how behavioral syndromes contribute to differences between integrated and wild steelhead populations, and 2) whether broodstock selection protocols or manipulation of the hatchery rearing environment is most effective at mitigating observed behavioral differences between integrated hatchery and wild populations. We will produce draft annual reports describing the work completed on our research program and any preliminary data analysis within two months of the end of the annual performance period. Within one month of receiving BPA comments on the draft, the document will be edited and republished as the Annual Report. 10/31/2007 12/31/2009 $232,350
Biological objectives
Maximize fitness & reproductive success
Metrics

Section 8. Budgets

Itemized estimated budget
ItemNoteFY07FY08FY09
Personnel NOAA personnel (up to 6, various FTE durations) $45,455 $85,629 $94,980
Fringe Benefits NOAA personnel $22,681 $42,729 $47,395
Overhead NOAA $35,674 $67,224 $74,566
Travel lodging, per diem, vehicles, airfare, meeting registration $7,182 $13,797 $8,842
Supplies laboratory and field equipment and supplies to conduct research $22,583 $28,933 $14,880
Capital Equipment freshwater recirculation system & Digital Video Recorder $40,235 $0 $0
Other rents & utilities $26,156 $6,909 $11,700
Other subcontracts: labor, statistics, electrical installation and repair $85,472 $64,457 $66,634
Totals $285,438 $309,678 $318,997
Total estimated FY 2007-2009 budgets
Total itemized budget: $914,113
Total work element budget: $914,113
Cost sharing
Funding source/orgItem or service providedFY 07 est value ($)FY 08 est value ($)FY 09 est value ($)Cash or in-kind?Status
NOAA personnel $63,289 $88,161 $91,688 In-Kind Confirmed
WDFW personnel $776 $0 $0 In-Kind Confirmed
Totals $64,065 $88,161 $91,688

Section 9. Project future

FY 2010 estimated budget: $300,000
FY 2011 estimated budget: $300,000
Comments: The FY 2010 estimated budget provides a contingency plan if the number of sexually mature adult steelhead is inadequate to conduct a valid experiment in 2009. The plan would be to wait until 2010 and complete the proposed research.

Future O&M costs: Because this is a research project, there are no future operations and maintenance costs, once all the experiments are complete, the data analyzed, and the results published.

Termination date: none
Comments: The proposed research will terminate once all experiments are conducted, the data are analyzed, and the annual reports are completed. In the course of conducting the proposed research additional hypotheses may be identified that regional managers consider a high priority for testing, requiring the continuation of the project into future fiscal years to provide additional evaluation of and insight into hatchery reform efforts for steelhead populations in the Columbia River Basin.

Final deliverables: The final deliverables for the proposed research will be annual reports, presentations at scientific meetings, and manuscripts published in peer-reviewed scientific journals.

Section 10. Narrative and other documents


Reviews and recommendations

FY07 budget FY08 budget FY09 budget Total budget Type Category Recommendation
NPCC FINAL FUNDING RECOMMENDATIONS (Oct 23, 2006) [full Council recs]
$0 $0 $0 $0 Expense Basinwide Do Not Fund
NPCC DRAFT FUNDING RECOMMENDATIONS (Sep 15, 2006) [full Council recs]
$0 $0 $0 $0 Basinwide

ISRP PRELIMINARY REVIEW (Jun 2, 2006)

Recommendation: Response requested

NPCC comments: This project is a fundamental research project aimed at gaining broader understanding of behavioral differences between wild steelhead and supplementation steelhead. Previous work has shown such differences between wild and domesticated steelhead, but this is aimed specifically at supplementation. There is good scientific justification for the work, with recent references, but the problem of behavioral differences between wild and hatchery steelhead was not fully captured. Stress response, feeding, and aggression differences are of interest, but of greater interest is the culmination of behavioral differences into overall differences in reproductive success and impact of hatchery fish on wild fish. The second component of this proposal captures this, somewhat, on the issue of residualism. There are other differences that might be explored as part of this work, including differences in run-timing (hatchery maturation schedules may be accelerated), spawning (time and location, interaction with wild, role of morphology), and further work on residualism (predation, competition, spawning, survival). This research project is potentially fundable as it addresses a key uncertainty (equivalency of wild v. supplementation steelhead). The approach is relatively solid, albeit exploratory and a first step. There are some improvements possible in design (or at least in presentation) to address a couple issues regarding statistical power and logical next steps (response requested). The title is somewhat misleading; this work itself will, in fact, not minimize behavioral difference, but rather will investigate a limited number of these differences. Moreover, important differences that occur in the wild are not as well covered. Observations planned are mainly in the hatchery, and may not reflect the differences that occur in the wild. A more thorough literature review and expansion of the proposal (including graduate work) may capture a broader spectrum of the differences that remain within "integrated" populations. The proposal is not specifically tied to any single subbasin plan. The sponsors might conduct a rapid screen of such plans for specific priorities and present these as a rationale to strengthen the proposal. Regardless, it is tied to the Council’s 2005 research plan. An important element is the addressing of groups of interlinked behaviors that might emerge from the transitional hatchery experience (1 generation) associated or expected with supplementation. This study begins to address key assumptions of supplementation: i.e., behaviors among wild v. supplementation are effectively similar and that any differences will have little consequence (fitness, viability, etc.) to the recipient population. This project may provide some basic data as to whether supplementation steelhead have similar or comparable behavioral responses to stresses associated with the hatchery environment as wild steelhead. Similarly, some basic data will be provided to assess similarity in fitness and viability. The timelines are appropriate for such exploratory experimentation and are tied to the Fish and Wildlife Program through the 2005 research plan. Objectives are concisely stated as experimental hypotheses with appropriate methods described. While the work is largely based in the hatchery environment, some attempt to make field observation and expand experimental channel studies would strengthen the value of the work. More specifically, from this work we will learn about hatchery stresses. If correctly understood from the motivations of the study, however, we need to learn about how the supplementation steelhead endure the stresses of the wild environment. That said, this is probably a tractable and manageable first step (but, the sponsors might wish to contemplate the logical and much needed next step). Thus, the handling event is "stressor" to which the first variable will test, is this the typical stress event in the hatchery environment (as opposed to feeding aggression, heron predation, human presence, etc.). Little background is provided regarding the adequacy and appropriateness of the opaque container method. The sponsors would also improve the proposal by including a basic “power” analysis that addresses sample sizes needed and a discussion of what the experimental unit actually is (individual fish or the cohort). This latter consideration is critical for statistical power and how generalizable the results will be. Lastly, the sponsors indicate that genetic analyses for pedigrees will be conducted. Will this be part of the sponsored project? It is not clear why, by whom, and how it really ties in with the hypotheses to be tested.


ISRP FINAL REVIEW (Aug 31, 2006)

Recommendation: Response requested

NPCC comments: This project is a fundamental research project aimed at gaining broader understanding of behavioral differences between wild steelhead and supplementation steelhead. Previous work has shown such differences between wild and domesticated steelhead, but this is aimed specifically at supplementation. There is good scientific justification for the work, with recent references, but the problem of behavioral differences between wild and hatchery steelhead was not fully captured. Stress response, feeding, and aggression differences are of interest, but of greater interest is the culmination of behavioral differences into overall differences in reproductive success and impact of hatchery fish on wild fish. The second component of this proposal captures this, somewhat, on the issue of residualism. There are other differences that might be explored as part of this work, including differences in run-timing (hatchery maturation schedules may be accelerated), spawning (time and location, interaction with wild, role of morphology), and further work on residualism (predation, competition, spawning, survival). This research project is potentially fundable as it addresses a key uncertainty (equivalency of wild v. supplementation steelhead). The approach is relatively solid, albeit exploratory and a first step. There are some improvements possible in design (or at least in presentation) to address a couple issues regarding statistical power and logical next steps (response requested). The title is somewhat misleading; this work itself will, in fact, not minimize behavioral difference, but rather will investigate a limited number of these differences. Moreover, important differences that occur in the wild are not as well covered. Observations planned are mainly in the hatchery, and may not reflect the differences that occur in the wild. A more thorough literature review and expansion of the proposal (including graduate work) may capture a broader spectrum of the differences that remain within "integrated" populations. The proposal is not specifically tied to any single subbasin plan. The sponsors might conduct a rapid screen of such plans for specific priorities and present these as a rationale to strengthen the proposal. Regardless, it is tied to the Council’s 2005 research plan. An important element is the addressing of groups of interlinked behaviors that might emerge from the transitional hatchery experience (1 generation) associated or expected with supplementation. This study begins to address key assumptions of supplementation: i.e., behaviors among wild v. supplementation are effectively similar and that any differences will have little consequence (fitness, viability, etc.) to the recipient population. This project may provide some basic data as to whether supplementation steelhead have similar or comparable behavioral responses to stresses associated with the hatchery environment as wild steelhead. Similarly, some basic data will be provided to assess similarity in fitness and viability. The timelines are appropriate for such exploratory experimentation and are tied to the Fish and Wildlife Program through the 2005 research plan. Objectives are concisely stated as experimental hypotheses with appropriate methods described. While the work is largely based in the hatchery environment, some attempt to make field observation and expand experimental channel studies would strengthen the value of the work. More specifically, from this work we will learn about hatchery stresses. If correctly understood from the motivations of the study, however, we need to learn about how the supplementation steelhead endure the stresses of the wild environment. That said, this is probably a tractable and manageable first step (but, the sponsors might wish to contemplate the logical and much needed next step). Thus, the handling event is "stressor" to which the first variable will test, is this the typical stress event in the hatchery environment (as opposed to feeding aggression, heron predation, human presence, etc.). Little background is provided regarding the adequacy and appropriateness of the opaque container method. The sponsors would also improve the proposal by including a basic “power” analysis that addresses sample sizes needed and a discussion of what the experimental unit actually is (individual fish or the cohort). This latter consideration is critical for statistical power and how generalizable the results will be. Lastly, the sponsors indicate that genetic analyses for pedigrees will be conducted. Will this be part of the sponsored project? It is not clear why, by whom, and how it really ties in with the hypotheses to be tested.