FY 2003 Mainstem/Systemwide proposal 200303400

Additional documents

TitleType
35027 Narrative Narrative
35027 Powerpoint Presentation Powerpoint Presentation
35027 Sponsor Response to the ISRP Response

Section 1. Administrative

Proposal titleEvaluation of Two Captive Rearing Methods for Assisting with Recovery of Naturally Spawning Populations of Steelhead and Coho Salmon
Proposal ID200303400
OrganizationU.S. Fish and Wildlife Service (USFWS)
Proposal contact person or principal investigator
NameDonald E. Campton
Mailing addressAbernathy Fish Technology Center (AFTC), 1440 Abernathy Creek Road Longview, WA 98632
Phone / email3604256072 / [email protected]
Manager authorizing this projectCarl V. Burger, Director, AFTC
Review cycleMainstem/Systemwide
Province / SubbasinMainstem/Systemwide /
Short descriptionTest and evaluate two hatchery reform methodologies; Assess natural reproductive success of returning hatchery-origin adults; Establish Abernathy, Germany, and Mill creeks as a Tier 3 "monitoring and evaluation" site for anadromous salmonids.
Target speciesSteelhead: Southwest Washington ESU Coho salmon: Lower Columbia River, Southwest Washington coast ESU Chinook salmon: Lower Columbia River ESU (naturalized population in Abernathy Creek)
Project location
LatitudeLongitudeDescription
Abernathy, Germany, Mill Creeks, WA; 9 miles W. of Longview, 11 miles E. of Cathlamet
46.1884 -123.1679 Abernathy Creek
46.1874 -123.1282 Germany Creek
46.1868 -123.1748 Mill Creek
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
182 Nat. Reprod. Success
183 Tier 3 M&E Site
184 Hatchery Reform Res.

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS/BPA Action 182 NMFS The Action Agencies and NMFS shall work within regional priorities and congressional appropriations processes to establish and provide the appropriate level of FCRPS funding for studies to determine the reproductive success of hatchery fish relative to wild fish. At a minimum, two to four studies shall be conducted in each ESU. The Action Agencies shall work with the Technical Recovery Teams to identify the most appropriate populations or stocks for these studies no later than 2002. Studies will begin no later than 2003.
NMFS/BPA Action 182 NMFS The Action Agencies and NMFS shall work within regional priorities and congressional appropriations processes to establish and provide the appropriate level of FCRPS funding for studies to determine the reproductive success of hatchery fish relative to wild fish. At a minimum, two to four studies shall be conducted in each ESU. The Action Agencies shall work with the Technical Recovery Teams to identify the most appropriate populations or stocks for these studies no later than 2002. Studies will begin no later than 2003.
NMFS Action 184 NMFS The Action Agencies and NMFS shall work within regional prioritization and congressional appropriation processes to establish and provide the appropriate level of FCRPS funding for a hatchery research, monitoring, and evaluation program consisting of studies to determine whether hatchery reforms reduce the risk of extinction for Columbia River basin salmonids and whether conservation hatcheries contribute to recovery.
NMFS/BPA Action 184 NMFS The Action Agencies and NMFS shall work within regional prioritization and congressional appropriation processes to establish and provide the appropriate level of FCRPS funding for a hatchery research, monitoring, and evaluation program consisting of studies to determine whether hatchery reforms reduce the risk of extinction for Columbia River basin salmonids and whether conservation hatcheries contribute to recovery.

Section 2. Past accomplishments

YearAccomplishment
2001 Initiated BPA Project No. 2000-072-00 (Unrelated to project proposed here).

Section 3. Relationships to other projects

Project IDTitleDescription
200101200 Evaluate new methodologies for monitoring Pacific salmon and steelhead / Evaluation of long-range PIT tags in Abernathy Creek Companion project
30003 Same title as project proposed here. Submitted for FY2003 funding under the Columbia Estuary Province

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
5. Replace existing adult weir at the Abernathy Fish Technology Center a. Survey field site, hydrology study 1 $10,000 Yes
5 b. Engineering design and construction planning to replace weir. 1 $35,000 Yes
5 USFWS engineering (17% of subcontract) 1 $7,650
USFWS Indirect costs (34.2%) 1 $18,006
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
5. Replace existing adult weir at the AFTC with a Smith-Root patented electric fish barrier 2004 2004 $375,000
5. USFWS Engineering Dept. (17% of construction subcontract) 2004 2004 $63,750
Outyear budgets for Construction and Implementation phase
FY 2004
$438,750

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
4. Monitor smolt outmigration in Abernathy, Germany, and Mill Creeks a.b. Set up one rotary screw trap in each stream and estimate total number of smolts for each species (WDFW) 5 $68,464 Yes
4. c. Monitor and evaluate potential residualism of released steelhead and coho via snorkel surveys (NMFS) 5 $20,000 Yes
1. Develop a native hatchery broodstock of steelhead by rearing, to sexual maturity, natural origin juveniles collected from Abernathy Creek. a.-e. Collect and rear age 0+ steelhead to one year of age; maintain previous brood years 3 $67,655
1. f. Estimate allele frequencies at 10-20 nuclear DNA microsatellite loci for NOR steelhead from Abernathy Creek 5 $18,000
2. Release progeny of captively-reared steelhead adults into Abernathy Creek. a.-d. Spawn adults, rear progey to smolt stage, tag/mark progeny, and release. 5 $67,655
3. Evaluate the overwinter survival of natural-origin, subyearling coho salmon in hatchery raceways as a potential conservation/restoration strategy. a.-d., f. Collect juveniles, overwinter for 6-7 months in a raceway, mark/tag, release, and perform physiological analyses of smolt quality. 3 $57,991
USFWS Indirect costs (34.2%) 5 $102,520
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
4. Monitor smolt outmigration in Abernathy, Germany, and Mill Creeks 2004 2007 $368,600
1. Develop a native hatchery broodstock of steelhead; DNA analyses 2004 2007 $180,000
2. Release progeny of captively-reared steelhead 2004 2007 $284,000
3. Evaluate overwinter survival of NOR coho salmon in hatchery raceways 2004 2005 $121,800
6. Monitor adult returns to Abernathy, Germany, and Mill Creeks 2005 2007 $180,000
Outyear budgets for Monitoring and Evaluation phase
FY 2004FY 2005FY 2006FY 2007
$269,050$329,050$268,150$268,150

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2003 cost
Personnel FTE: 3.3 $119,760
Fringe 35% $41,916
Supplies Backpack electroshocker ($5,000) Physiology lab, DNA analyses, hatchery costs $38,000
Indirect USFWS (34.5%) $120,526
NEPA Included in quote from Smith-Root $0
PIT tags # of tags: 3500 $7,875
Subcontractor Smith-Root: Engineering for weir replacement $52,650
Subcontractor WDFW: Smolt monitoring $68,464
Subcontractor NMFS: Snorkel surveys of residualized fish $20,000
Subcontractor Vancouver USFWS: PIT tagging labor $3,750
$472,941
Total estimated budget
Total FY 2003 cost$472,941
Amount anticipated from previously committed BPA funds$0
Total FY 2003 budget request$472,941
FY 2003 forecast from 2002$0
% change from forecast0.0%
Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Washington Dept. Fish & Wildlife Three rotary screw smolt traps $75,000 in-kind

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Aug 2, 2002

Comment:

Response Needed. After again reviewing this proposal as submitted to another provincial review, we continue to support the development of this proposal. However we are concerned that the design may not fully address the proposed objectives. The authors' propose to assess the use of juveniles, rather than adults, to initiate local brood stocks for supplementation programs. Removing juveniles would impose less of a demographic loss on a depressed population and may reduce the risk of a Ryman-Laikre effect on the genetic composition of the population (i.e. the expansion of a small sample of the population into a much larger portion of the supplemented population with associated changes in genetic variation). As proposed the project will measure the reproductive value (juvenile production) of the cultured fish using DNA assessments, but the plan includes very little assessment of the animals during culture. Consequently, assessment of this research relies on the final assessment of the juveniles produced by the cultured and natural parents, but provides little information about mechanism/effects of culture. If, for example, the cultured parents do not demonstrate reproductive value similar to the natural parents there would be no information suggesting the cause of this result. A Ryman-Laikre effect could still occur through the proposed culture of 0+ parr for (essentially) 1.5 generations, but monitoring of the culture period would be required to observe this outcome. Minor changes in the design (see attached flow chart) would allow for the monitoring of the cultured population, but would depend on the availability of single-family tanks for initial rearing of juveniles and the capability of the personnel to sample the families. We request that the proponents review these suggestions and provide appropriate practical revision to the design.

Our suggested enhancements to the study include:

  1. DNA sampling the original parr collected so that genetic variation in the source population is known
  2. Maintaining the families in individual rearing tanks until they are large enough to tag (CWT and/or PIT tags), sample families before pooling
  3. PIT tag at least 100 individuals per family before pooling in the raceways, this will facilitate studying family responses to culture (variation of growth--task 1.d.-- cannot be observed from observations of mean size of experimental groups.)
  4. Do not fin clip the fish as electronic sampling for blank wire will avoid the mortality associated with these fin clips
  5. Incorporate culture regimens (diet, ration, schedules, etc.) that achieve natural growth trajectories of parr and pre-smolts rather than regimens that " Maximize...growth rate and minimize the variance in growth rate"--task 1.e. of the proposal. Physiological research on fitness of smolts (by Dickhoff and others) suggests that traditional growth-maximizing regimens may be inappropriate for supplementation programs.
  6. Sample phenotypic traits of the PIT tagged fish as they are being released from the raceways as smolts including physiological assessments such as those proposed for coho smolts (task 3.c.).
  7. Use the barrier fence to divert all adult steelhead through the facility and to electronically sample for CWT and PIT tagged fish.
  8. Incorporate truly randomized mate-assignment protocols (task 2.a.) (Quinn and others at Forks Cr Hatchery have shown that apparently random mate assignments in steelhead broodstocks are not random with respect to phenotypic characters)
  9. Consider how to sample and/or use kelts that will be produced and how to manage the barrier fence when the kelts are moving downstream.

The ISRP is taking this unusual step of providing detailed suggestions as this is the third time we have considered this proposal and each time have supported it. We also note that there is a strong cost sharing aspect to the program as WDFW will provide three rotary screw traps, and USFWS is proposing to recruit additional staff and has the facilities. The design as proposed would require a substantial investment in funds, facilities, and effort but, in our opinion, would not fully investigate the objectives presented.

We also note that the proposal has four components: the steelhead brood stock study, rearing of coho salmon in the hatchery to reduce over-winter mortality, replacement of the electronic fence in Abernathy Creek, and the development of a Tier 3 Monitoring and Evaluation Site (NMFS RPA No. 183) for Lower Columbia and Southwest Washington ESUs of steelhead, coho salmon, chinook salmon, and coastal cutthroat trout.

In our assessment, the recommended priority of these activities should be:

  1. Establishment of a Tier 3 Monitoring and Evaluation program complete with participation of WDFW, and replacement of the Abernathy fence through this submission. (High priority)
  2. Conducting the steelhead broodstock study as expanded in the attached flow chart (with amended budget). (High-Medium priority), and
  3. Conducting the coho over-wintering study (Low priority) What is the justification for the coho approach? Has overwinter instream survival of coho juveniles been identified as a limiting factor in the Abernathy Creek coho population?
    1. Outline of Steelhead Research program for Project #35027 USFWS (figure)

      Action Agency/NMFS RME Group Comments:

      HARVEST AND HATCHERY SUBGROUP -- Address critical element of RPA? Relevant to RPA 182, 184. With respect to RPA 184, the steelhead aspect of the proposal may provide a viable alternative to "broodstock mining" and genetic bottlenecks for conservation hatchery programs seeking to obtain and utilize local stocks (the thrust of many reforms).

      Scope? [ESU's covered, Transferability, Species covered] Targeted species are as follows. Steelhead: Southwest Washington ESU, Coho salmon: Lower Columbia River, Southwest Washington coast ESU, Chinook salmon: Lower Columbia River ESU (naturalized population in Abernathy Creek). Proposal includes more than one listed species and ESU, and may have transferability to many others. As a side benefit, this technique, if successful, might have direct application to SNAPP (RPA 175)

      Study design adequate, as is, or as may be modified? Well designed and written.

      ISRP Remarks on RME Group Comments:

      The ISRP generally agrees, but has some questions and suggestions regarding the study design.


      Recommendation:
      Urgent
      Date:
      Oct 24, 2002

      Comment:

      The project sponsor is dropping the coho portion of the proposal in order to add additional tasks on steelhead in response the ISRP comments. The project sponsor will submit a revised budget that represents the proposed modifications. If this project and Project Number 35060 are funded, cost efficiencies will be available. Is there a data gap in knowledge for raising steelhead in captivity? It is the understanding of several of the reviewers that the underpinnings of captive broodstock technology was based on developing steelhead protocols.
      Recommendation:
      Urgent
      Date:
      Oct 24, 2002

      Comment:

      A revised budget was requested for #35027 by itself because of the recommendations of the ISRP, which resulted in deleting one Objective (#3) and adding a new Objective (new Objective #3) to address the potential genetic effects of culture. Overall, this reduced slightly the FY03 budget. The project sponsor received a commitment from USFWS for funds to replace the outdated electric weir with a new electric barrier system. These new funds reduce the cost of their proposed budget (Project Number 35027 or 35027/35060 combined) by $64,233 in FY2003 and by approximately $500,000 in FY2004. Funds requested in FY2003 were for surveying, permitting, and design. Funds requested in FY2004 were for construction. The majority of funds requested under our reduced budget are now personnel related. We sincerely hope this new commitment of USFWS funds will greatly improve the chances of BPA funding for our proposed RME studies under Project Numbers 35027 and 35060. The proposed budget presented here is for 35027 alone, see the full response to CBFWA for combining this project with 35060.
      Recommendation:
      Fund
      Date:
      Nov 5, 2002

      Comment:

      Fundable. We agree with the CBFWA review, budget reductions, and Urgent ranking. This is a strong proposal that the ISRP has reviewed twice prior to the Mainstem / Systemwide provincial review. Each time we have supported it, as we do now. The proposal has four components: the steelhead brood stock study, rearing of coho salmon in the hatchery to reduce over-winter mortality, replacement of the electronic fence in Abernathy Creek, and the development of a Tier 3 Monitoring and Evaluation Site (NMFS RPA No. 183) for Lower Columbia and Southwest Washington ESUs of steelhead, coho salmon, chinook salmon, and coastal cutthroat trout.

      The authors' propose to assess the use of juveniles, rather than adults, to initiate local brood stocks for supplementation programs. Removing juveniles would impose less of a demographic loss on a depressed population and may reduce the risk of a Ryman-Laikre effect on the genetic composition of the population (i.e. the expansion of a small sample of the population into a much larger portion of the supplemented population with associated changes in genetic variation).

      In our preliminary comments, the ISRP took the unusual step of providing detailed suggestions on study design modifications to the project sponsor, as this is the third time we have considered this proposal. The project sponsor's response to the ISRP preliminary concerns was adequate and demonstrated full consideration of the ISRP comments. The sponsors modified the proposed design to address ISRP concerns so that the proposed monitoring now includes both natural and cultured populations.

      We also note that there is a strong cost sharing aspect to the program as WDFW will provide three rotary screw traps, and USFWS is proposing to recruit additional staff and has the facilities to conduct the proposed work. If funded, this project should be coordinated with other monitoring projects to ensure compatibility of objectives, common methods, and protocols. This coordination could be accomplished under the favorably reviewed CBFWA proposal #35033.


      Recommendation:
      Date:
      Jan 21, 2003

      Comment:

      Statement of Potential Biological Benefit
      Indirect. Investigate two hatchery methodologies that can potentially assist with recovery of naturally spawning populations of steelhead and coho.

      Comments
      The proposal is of biological relevance to ESA-listed species. Specifically, the steelhead aspect of the proposal may provide a viable alternative to "broodstock mining" and addresses genetic bottlenecks for conservation hatchery programs that will be seeking to obtain and utilize local stocks (the thrust of many hatchery reforms). The proposal targets ESUs for listed species as follows: Steelhead: Southwest Washington ESU, Coho Salmon: Lower Columbia River, Southwest Washington coast ESU, Chinook Salmon: Lower Columbia River ESU (naturalized population in Abernathy Creek). The proposal includes more than one listed species and ESU, and may have transferability to many others. As a side benefit, this technique, if successful, might have direct application to Safety Net Artificial Propagation Programs. The study design is adequate and the proposal is well written.

      Already ESA Required?
      No

      Biop?
      Yes


      Recommendation:
      Fund
      Date:
      Jun 2, 2003

      Comment:

      NPCC tier 3
      Recommendation:
      Do Not Fund (Tier 3)
      Date:
      Jun 11, 2003

      Comment:

      Category:
      3. Other projects not recommended by staff

      Comments: