FY 2002 Blue Mountain proposal 199801004

Section 1. Administrative

Proposal titleMonitor and EvaluateYearling Snake River Fall Chinook Released Upstream Of Lower Granite Dam
Proposal ID199801004
OrganizationNez Perce Tribe (NPT)
Proposal contact person or principal investigator
NameStephen J. Rocklage
Mailing address3404 Hwy. 12 Orofino, ID 83544
Phone / email2084763626 / [email protected]
Manager authorizing this projectJaime Pinkham
Review cycleBlue Mountain
Province / SubbasinBlue Mountain / Snake Hells Canyon
Short descriptionMonitor and evaluate survival and performance of yearling fall chinook from Pittsburg Landing, Big Canyon, and Captain John acclimation facilities (Project 199801005) to maximize success of the fall chinook supplementation program above Lower Granite Dam.
Target speciesFall Chinook Salmon. Yes, is part of an ESU. Snake River fall chinook salmon listed as threatened on April 22, 1992.
Project location
LatitudeLongitudeDescription
46.4888 -116.4326 Big Canyon Acclimation Facility - Clearwater River
46.1341 -116.9297 Captain John Rapids Acclimation Facility - Snake River
45.6296 -116.4762 Pittsburg Landing Acclimation Facility - Snake River
46.3357 -117.0325 Fixed Telemetry site at Asotin, WA - Snake River
46.432 -116.9557 Fixed Telemetry Site at Potlatch Mill (Lewiston, ID) - Clearwater River
46.6563 -117.4262 Lower Granite Dam
46.1886 -119.0296 Snake River at confluence with Columbia River
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
Hatchery RPA Action 169
RM&E RPA Action 184

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 184 NMFS The Action Agencies and NMFS shall work within regional prioritization and congressional appropriation processes to establish and provide the appropriate level of FCRPS funding for a hatchery research, monitoring, and evaluation program consisting of studies to determine whether hatchery reforms reduce the risk of extinction for Columbia River basin salmonids and whether conservation hatcheries contribute to recovery.
NMFS/BPA Action 184 NMFS The Action Agencies and NMFS shall work within regional prioritization and congressional appropriation processes to establish and provide the appropriate level of FCRPS funding for a hatchery research, monitoring, and evaluation program consisting of studies to determine whether hatchery reforms reduce the risk of extinction for Columbia River basin salmonids and whether conservation hatcheries contribute to recovery.

Section 2. Past accomplishments

YearAccomplishment
2001 PIT tagged 7,503 yearling chinook at Pittsburg, 7,499 at Big Canyon, and 2,518 at Captain John in cooperation with the WDFW (at Captain John). Allows us to estimate survival and decribe emigration behavior from release to Lower Snake River dams.
2001 Radio tagged, released, and recorded locations on 50 yearling chinook from each the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids facilities. Allows us to partition and describe yearling fall chinook emigration behavior.
2001 Yearling chinook health assessments were performed at the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids facilities by the USFWS.
2000 PIT tagged 7,477 yearling chinook at Pittsburg, 7,421 at Big Canyon, and 2,488 at Captain John in cooperation with the WDFW (at Captain John). Estimated survival and described emigration behavior from release to Lower Snake River dams.
2000 Radio tagged, released, and recorded locations on 50 yearling chinook from each the Pittsburg, Big Canyon, and Captain John facilities. Found yearling fall chinook emigration rates to be higher in free-flowing river than in impounded reaches.
2000 Yearling chinook health assessments were performed at the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids facilities by the USFWS.
2000 125 supplementation adult fall chinook were radio tagged at Lower Granite Dam by the USFWS. We assisted in monitoring by conducting fixed-wing aircraft telemetry flights. Allowed for description of adult migration patterns.
1999 PIT tagged 9,943 yearling chinook at Pittsburg, 12,182 at Big Canyon, and 2,494 at Captain John in cooperation with the WDFW (at Captain John). Estimated survival and described emigration behavior from release to Lower Snake River dams.
1999 Radio tagged, released, and recorded locations on 50 yearling chinook from each the Pittsburg, Big Canyon, and Captain John facilities. Found yearling fall chinook emigration rates to be higher in free-flowing river than in impounded reaches.
1999 Yearling chinook health assessments were performed at the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids facilities by the USFWS.
1999 62 supplementation adult fall chinook were radio tagged at Lower Granite Dam by the USFWS. We assisted in monitoring by conducting fixed-wing aircraft telemetry flights. Allowed for description of adult migration patterns.
1998 PIT tagged 9,942 yearlings at Pittsburg, 7,458 at Big Canyon, and 1,253 at Captain John in cooperation with USFWS (Pittsburg) and WDFW (Captain John). Estimated survival and described emigration behavior from release to Lower Snake River dams.
1998 Radio tagged, released, and recorded locations on 50 yearling chinook from each the Pittsburg, Big Canyon, and Captain John facilities. Found yearling fall chinook emigration rates to be higher in free-flowing river than in impounded reaches.
1998 Yearling chinook health assessments were performed at the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids facilities by the USFWS.
1998 45 supplementation adult fall chinook were radio tagged at Lower Granite Dam by the USFWS. We assisted in monitoring by conducting fixed-wing aircraft telemetry flights. Allowed for description of adult migration patterns.
1997 PIT tagged 9,916 yearling chinook at Pittsburg and 10,051 at Big Canyon facility in cooperation with the USFWS and WDFW, respectively. Estimated survival and analyzed emigration data from release to Lower Snake River dams.
1997 Radio tagged, released, and recorded locations on 98 yearling chinook at the Pittsburg Landing facility and 97 at Big Canyon Creek. Found yearling fall chinook emigration rates to be higher in free-flowing river than in impounded reaches.
1997 Yearling chinook health assessments were performed at the Pittsburg Landing and Big Canyon Creek facilities by the USFWS.
1997 16 supplementation adult fall chinook were radio tagged at Lower Granite Dam by the USFWS. We assisted in monitoring by conducting fixed-wing aircraft telemetry flights. Allowed for description of adult migration patterns.
1996 PIT tagged 12,421 yearling chinook at the Pittsburg Landing facility in cooperation with the USFWS. Estimated survival and described emigration behavior from release to Lower Snake River dams.

Section 3. Relationships to other projects

Project IDTitleDescription
20541 Snake River Fall Chinook Salmon Studies (Umbrella Proposal) Umbrella proposal to implement Tribal and Federal Snake River fall chinook recovery plans by assessment and M&E of attributes and survival of natural juveniles, Lyons Ferry Hatchery yearlings and subyearlings, and returning adult Snake River fall chinook.
199102900 Life History and Survival of Fall Chinook Salmon in the Columbia R. Basin Complementary project monitoring and evaluating post-release attributes and survival of natural and hatchery juvenile fall chinook in the Snake River. Information sharing.
199302900 Survival Estimates for Passage of Juvenile Salmonids Through Dams and Reservoir Estimates survival of salmonids, including subyearling fall chinook, during passage through Lower Snake River dams.
199403400 Assessing Summer and Fall Chinook Restoration in the Snake River Basin Cooperate to perform fall chinook research in the Clearwater River basin. Collect, analyze and distribute juvenile rearing and migration and adult spawning data.
199801003 Monitor and Evaluate Spawning Distribution of Snake R. Fall Chinook Salmon 9801004 cooperates with 9801003 for radio tagging adult fall chinook at Lower Granite Dam and conducting adult fall chinook spawning ground surveys, carcass recovery, and fall chinook adult mobile and fixed telemetry in Snake River and tributaries.
199801005 Pittsburg Landing, Captain John Rapid, & Big Canyon Fall Chinook Acclimation Facilities Project 9801005 acclimates 150,000 supplementation yearlings and available subyearlings from each facility for release into the Snake River basin.
199102900 Understanding the effects of summer flow augmentation on the migratory behavior and survival of fall chinook salmon migrating through L. Granite Res. Complementary research for fall chinook passage survival studies through the Lower Snake River dams. Information sharing.
198810804 STREAMNET Provide information for use in database.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Construction and Implementation phase

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Monitor, evaluate, and compare pre-release and release conditions of yearling hatchery fall chinook released at the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids acclimation facilities with on-station releases at Lyons Ferry Hatchery. a. Coordinate with the Dworshak Hatchery Fish Health Lab in conducting weekly health assessments on a sample of 100 fish at each the Pittsburg Landing, Captain John Rapids, and Big Canyon Creek acclimation facilities. 13 $1,248
b. Document fish size and weight on fish sampled in Task 1.1 during PIT tagging (Task 2.2). 13 $2,956
c. Using data from Tasks 1.1 and 1.2 compare fish size and condition factor of fish reared at Big Canyon, Pittsburg Landing, Captain John Rapids, and LFH. 13 $2,772
d. Check a representative sample of 1,500 fish for elastomer tag retention at Big Canyon Creek and Pittsburg Landing while PIT tagging (Task 2.2) and assist the WDF in checking elastomer tag retention while PIT tagging at Captain John Rapids. 13 $2,956
2. Monitor, evaluate, and compare post-release behavior, migration timing, and survival of yearling fall chinook released at Pittsburg Landing, Big Canyon Creek, Captain John Rapids, and LFH. a. Radio tag 50 yearling fall chinook at each the Pittsburg Landing, Captain John, and Big Canyon acclimation facilities one day prior to release. 13 $39,163
b. Place fixed radio receivers at the downstream end of the free-flowing stretch of the Snake and Clearwater Rivers and at Lower Granite and dam and monitor movement patterns and migration rates in the free-flowing and impounded reaches of these systems. 13 $8,315
c. Coordinate with the NPT, USFWS, BRD, University of Idaho (UI), and WDFW on radio telemetry equipment and data collection positions that may be shared for this study. 13 $1,872
d. Monitor individual fish locations by fixed-wing flights and boat every day for four weeks after release from Pittsburg Landing, Captain John Rapids, and Big Canyon Creek to Little Goose Dam and plot locations using GPS and detailed navigation maps. 13 $37,571 Yes
e. Compile temperature and discharge data in the Snake and Clearwater Rivers, and in Lower Granite Reservoir and supplement thermographs where needed. 13 $4,989
f. Evaluate fish distribution and travel times in relation to environmental variables (water temperature, discharge, etc.). 13 $16,623
g. PIT tag up to 10,000 fall chinook yearlings (2,500 X 4 replicate groups) acclimated at Big Canyon Creek and Pittsburg Landing and assist the WDF in PIT tagging comparable numbers at the Captain John Rapids facility. 13 $84,870
h. Compile and analyze PIT tag detection data at all mainstem dams and compare arrival timing, mean detections dates and travel times for the fish released at Big Canyon Creek, Pittsburg Landing, Captain John Rapids and PIT tag releases at LFH. 13 $11,082
i. Evaluate the effect of fish size on travel time from Big Canyon Creek and Captain John Rapids to Lower Granite Dam by partitioning release fork lengths in 5 mm increments and analyze using analysis of variance (ANOVA). 13 $7,388
j. Use the PIT tag database compiled for Task 2.9. and the SURPH model to estimate fish survival from the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids releases to the Snake and Columbia River (McNary) dams. 13 $16,623
3. Monitor and compare contribution and distribution of adult returns and smolt-to-adult survivals of yearling fall chinook released from Pittsburg Landing, Captain John Rapids, Big Canyon Creek, and LFH. a. Assist BPA project 9403400 collecting adult spawning carcass data on the Clearwater, Salmon, and Grande Ronde Rivers from supplementation or hatchery released fish and to gather percent spawned information to estimate spawning success. 13 $10,868
b. Assist project 9801003 in radio tagging adult fall chinook and monitor adult movements in Lower Granite and Little Goose Reservoirs weekly by fixed wing flights from early September through mid December and provide locations to the USFWS for analysis. 13 $16,369
c. Assist project 9403400 in conducting aerial spawning surveys on the Clearwater, Salmon, and Grande Ronde Rivers and provide location data to project 9801003 to analyze adult movements and locations of radio tagged supplementation fish. 13 $10,110
d. Estimate the total redd contribution in the Clearwater, Grande Ronde, and Salmon Rivers by supplemented fall chinook released at Pittsburg Landing, Captain John Rapids, and Big Canyon Creek acclimation facilities released at LFH. 13 $6,546
e. Coordinate with the WDF and USFWS in compiling the adult recovery information to estimate and compare smolt-to-adult survivals from yearling releases at Pittsburg Landing, Captain John Rapids, Big Canyon Creek, and releases at LFH. 13 $16,623
4. Prepare an annual report and provide quarterly progress reports that evaluate the success of supplementation of yearling fall chinook salmon above Lower Granite Dam. a. Provide project status reports on a quarterly basis. Quarterly reporting requirements are detailed in the BPA Terms and Conditions (Reports are due 15 days after the quarter ending March 31, June 30, September 30, and December 31, 2002). 13 $1,476
b. Evaluate the success of the supplementation of LFH yearlings above Lower Granite Dam to increase natural production and assess potential impacts to natural fall chinook populations and productivity. 13 $11,351
c. Write annual report on the results of the objectives and tasks outlined above. Submit report for electronic publication on the BPA internet site. Also distribute pertinent information to cooperating projects and agencies. 13 $18,470
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Monitor, evaluate, and compare pre-release and release conditions of yearling hatchery fall chinook released at the Pittsburg Landing, Big Canyon Creek, and Captain John Rapids acclimation facilities with on-station releases at Lyons Ferry Hatchery. 2003 2006 $42,797
2. Monitor, evaluate, and compare post-release behavior, migration timing, and survival of yearling fall chinook released at Pittsburg Landing, Big Canyon Creek, Captain John Rapids, and LFH. 2003 2006 $984,621
3. Monitor and compare contribution and distribution of adult returns and smolt-to-adult survivals of yearling fall chinook released from Pittsburg Landing, Captain John Rapids, Big Canyon Creek, and LFH. 2003 2006 $260,769
4. Prepare an annual report and provide quarterly progress reports that evaluate the success of supplementation of yearling fall chinook salmon above Lower Granite Dam. 2003 2006 $134,862
Outyear budgets for Monitoring and Evaluation phase
FY 2003FY 2004FY 2005FY 2006
$340,148$350,352$360,862$371,687

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 2.53 $118,390
Fringe $28,908
Supplies $33,423
Travel Air Travel: 2 to SEA, 3 to PDX, 3 to BOI 4 days perdiem per flight, 4 days car rental for 2 flights $4,652
Indirect 20.9% of Direct Costs $38,743
Capital Coded Radio Tags (150 tags) $32,250
PIT tags # of tags: 27,500 $61,875
Subcontractor Yearling and Adult Fall Chinook Telemetry Fixed Wing Aircraft Charter Flights $12,000
$330,241
Total estimated budget
Total FY 2002 cost$330,241
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$330,241
FY 2002 forecast from 2001$290,000
% change from forecast13.9%
Reason for change in estimated budget

Primarily due to increase in number of PIT tags purchased for tagging subyearlings released from the acclimation facilites as well as the labor and other costs associated with this additional PIT tagging. Also the cost of coded radio tags increased approximately 11%. Other additional costs include increases in administrative support (ESA Coordinator salary and fringe, travel costs, office expansion shared costs, etc.) and the purchase of a closed trailer to transport PIT tagging equipment.

Reason for change in scope

In recent years there have been significant numbers of subyearling fall chinook from Lyons Ferry Hatchery that have been made available for acclimation and release at the Pittsburg, Big Canyon and Captain John acclimation facilities after the yearlings have been released. We determined that monitoring and evaluation of these subyearlings would be most appropriately included in this project.

Cost sharing
OrganizationItem or service providedAmountCash or in-kind

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Sep 28, 2001

Comment:

A response is needed. This proposal addresses the M&E portions of the fall chinook assessments related to the acclimation ponds in the NPT area (Big Canyon, Captain John Rapids, Pittsburg Landing). M&E include inspections for fish health, tagging with PIT tags and elastomer tags, and a radio-tracking study to examine the emigration behavior of fall chinook smolts. While this is an on-going M&E program, a response is requested since no results are presented and, consequently, the value of the program is not supported or evident. The project is apparently well integrated with other associated projects but what results are being used and how are these results integrated in assessments?

The discussion of the problem of tag loss and other tag effects in the verbal presentation was not clear. What are the consequences of tag loss or negative effects of tagging on fish? The proposal does not adequate describe and interpret results to date. The presentation was helpful in adding to this, but more summary is needed of what has been learned and problems that might need solution. On-going M & E projects should be present results in the proposals and presentations. For instance, the SAR data should be reported.

The evaluation objective for these programs (this proposal and 199801005 [O&M for acclimation ponds] ) is not clear. The program objectives are to achieve de-listing goals for fall chinook, to restore harvest, and to maintain the genetic integrity of the natural populations. The M&E described in this proposal and 199801005 does not seem to adequately address these goals. Are they to be addressed in another proposal (if so identify it), or is there a deficiency identified here?

The methods section presents hypotheses for each objective but then also provides a "corollary" for each also. These read as if they are the alternative hypothesis but this is not what a corollary would normally imply. A corollary follows directly from what is proven, so that if the original hypothesis was correct then a corollary follows obviously from this result or statement.


Recommendation:
High Priority
Date:
Nov 30, 2001

Comment:

This project addresses RPA 184.
Recommendation:
Do Not Fund
Date:
Dec 21, 2001

Comment:

Not Fundable. Inadequate response. Given the ISRP's continued questions about this proposal, the ISRP recommends not funding this proposal again until a comprehensive response is provided - PI's may need help generating that response. The ISRP clearly recognizes the need to continue these types of assessments but on the basis of this proposal, the ISRP cannot conclude that a sound scientific program is in place. This proposal addresses the M&E portions of the fall chinook assessments related to the acclimation ponds in the NPT area (Big Canyon, Captain John Rapids, Pittsburg Landing). M&E include inspections for fish health, tagging with PIT tags and elastomer tags, and a radio-tracking study to examine the emigration behavior of fall chinook smolts.

While the authors have responded to most of the original review comments, the reviewers remain concerned about aspects of this proposal and its response. Nevertheless, this monitoring needs to continue, so further clarification is requested.

1) The response provides a summary of data and analysis to date. It should also include a discussion of problems of interpretation or shortcomings apparent in the data or how they are being used to address ultimate goals.

2) The response gives much useful information about the tagging procedures and purposes, but does not answer the question about consequences of tag loss or negative effects of tagging.

3) The response does not answer all of comment 3: How does M&E address maintenance of genetic integrity of natural populations. What was the base level of genetic integrity defined and how is it now being estimated?

4) It is also not clear what is meant by the emphasis on maximizing program efficiency through adaptive management to achieve delisting. This use of the data should be more clearly described, including both rationale and procedures to be used in evaluation. What adaptive management plan has been developed or are the authors simply referring to "trial and error"?


Recommendation:
Date:
Feb 1, 2002

Comment:

Statement of Potential Biological Benefit to ESU
Benefits are indirect. Part of an ongoing M&E program associated with artificial propagation in the Blue Mt. province of the SR. Necessary work regarding contribution of hatchery escapement to naturally spawning population, as well as condition and behavior of hatchery juveniles IF the resulting information is integrated into the hatchery management program.

Comments
A good proposal. Needs stronger links to past work and the implications of the results. The potential results are important for the management of fall Chinook hatcheries.

Already ESA Req? No

Biop? Yes


Recommendation:
A Conditional
Date:
Feb 11, 2002

Comment:

Recommend funding conditioned upon receipt of a detailed and comprehensive research plan to be submitted for independent science review. Project review will also consider the necessity of all proposed objectives/tasks.

BPA RPA RPM:
184

NMFS RPA/USFWS RPM:
184


Recommendation:
Fund
Date:
Apr 19, 2002

Comment:

Council recommendation:

ISRP rated this ongoing Nez Perce monitoring project as Not Fundable. The ISRP noted: "The ISRP clearly recognizes the need to continue these types of assessments, but on the basis of this proposal, the ISRP cannot conclude a sound scientific program is in place...Nevertheless, this monitoring needs to continue, so further clarification is requested." The scientists then posed four specific areas they wished the project sponsors to address and clarify. Bonneville recommended funding the project conditioned on the receipt of a "detailed and comprehensive research plan to be submitted for independent scientific review. Project review will consider the necessity of all proposed objectives/tasks." NMFS rated the project as "a good proposal."

The Council believes there are compelling policy reasons to fund the project and agrees with ISRP and Bonneville that the project needs to continue. The Council understands that the Nez Perce have submitted a response to the ISRP's questions and concerns outlined in the ISRP Final Review. We recommend conditioning the funding on the ISRP's satisfaction that the project sponsors have addressed ISRP concerns, and recommend that the ISRP be directed to proceed with its review of the Nez Perce response. The project would be held to the FY01 plus 3.4 percent level.


Recommendation:
Fund
Date:
Jun 13, 2002

Comment:

Fund to implement RPA 184, H37conditioned upon ISRP final review of Nez Perce response.
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

FY02 burden on FY03.
Recommendation:
Date:
Sep 20, 2003

Comment:

FY2003 was funded at no increase from FY2002, not at the Council Recommended level of $297,076. FY2003 Obligated does not include PIT tag costs of $67,500 and reflects carryover from FY2002 of $25,510. The Sponsor Estimates of $307,173 for FY2004 and $317,617 for FY2005 each include PIT tag costs of $45,000.
REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$307,176 $307,176 $307,176

Sponsor comments: See comment at Council's website