FY 2002 Mountain Snake proposal 199901900

Section 1. Administrative

Proposal titleHolistic Restoration of the Twelvemile Reach of the Salmon River near Challis, Idaho
Proposal ID199901900
OrganizationCuster Soil & Water Conservation District/Idaho Governor's Office of Species Conservation (Custer SWCD / OSC)
Proposal contact person or principal investigator
NameKarma Bragg
Mailing addressCuster Soil and Water Conservation District PO Box 305, Challis, Idaho, 83226
Phone / email2088794428 / [email protected]
Manager authorizing this projectTed O'Neal/Jim Caswell
Review cycleMountain Snake
Province / SubbasinMountain Snake / Salmon
Short descriptionWork holistically to restore the channelized Salmon River corridor to a natural meandering form in balance with watershed processes that will restore geomorphic diversity, reduce bank erosion, lower summer temperatures and improve critical fish habitat.
Target speciesSnake River Spring/Summer Chinook, Snake River Steelhead, Bull Trout, Westslope Cutthroat Trout, Redband Rainbow Trout, and Other Aquatic and Riparian-associated Species Native to the Watershed.
Project location
LatitudeLongitudeDescription
44.51 -114.18 Mainstem Salmon R. near Challis, ID HUC No. 17060201
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
Habitat RPA Action 149
Habitat RPA Action 150
Habitat RPA Action 151
Habitat RPA Action 153

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 149 NMFS BOR shall initiate programs in three priority subbasins (identified in the Basinwide Recovery Strategy) per year over 5 years, in coordination with NMFS, FWS, the states and others, to address all flow, passage, and screening problems in each subbasin over 10 years. The Corps shall implement demonstration projects to improve habitat in subbasins where water-diversion-related problems could cause take of listed species. Under the NWPPC program, BPA addresses passage, screening, and flow problems, where they are not the responsibility of others. BPA expects to expand on these measures in coordination with the NWPPC process to complement BOR actions described in the action above.
NMFS Action 152 NMFS The Action Agencies shall coordinate their efforts and support offsite habitat enhancement measures undertaken by other Federal agencies, states, Tribes, and local governments by the following:

Section 2. Past accomplishments

YearAccomplishment
2000 Riparian enhancement and fencing and bank stabilization along 0.75 miles of the mainstem river, to maintain meanders.
2000 Completed surveys of river cross-sections, adjacent wetlands, and floodplains.
2000 Developed a hydrodynamic model of the study reach to assess flood risks, hydroperiod of floodplain and wetland areas, and physical characteristics of fish habitat.
2000 Completed a geomorphic study of both existing and historic conditions throughout the study reach.

Section 3. Relationships to other projects

Project IDTitleDescription
199202603 Upper Salmon Basin Watershed Project (USBWP) Administration/Implementation Support Administrative and public outreach functions associated with the actual habitat restoration planning and work (RPA Action #149, 150, 151, 152, 153, and 154) described in this proposal.
199306200 Salmon River Anadromous Fish Passage Enhancement RPA Action # 149, 150, 151, 152, 153, 154 - Improve Passage on Lemhi, Pahsimeroi, and East Fork Watersheds.
199600700 Consolidations RPA Action # 149, 150, 151, 152, 153, 154 - Consolidate irrigation diversions on Lemhi, Pahsimeroi, and Upper Salmon Watersheds.
199401500 Idaho Fish Screen Improvements (Idaho Dept. of Fish and Game) RPA Action # 149, 150, 151, 152, 153, 154 - Construction and installation of fish screens and diversions on Lemhi, Pahsimeroi, East Fork and Upper Salmon Watersheds.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Establish Database for Design and Adaptive management of the Twelvemile Reach a. Compile available physical and biological information into a common, web-accessible database maintained by a state agency to be identified in early 2002. 1 $12,000 Yes
1. b. Prepare a written report to summarize existing information on habitat conditions biological conditions and fish status within the watershed and on the status of natural processes affecting the formation, maintenance, and quality of this habitat. 1 $4,000 Yes
1. c. Identify data gaps and outline an approach to filling them, in the same written report. 1 $1,000 Yes
2. Use available predictive or other tools (including EDT and others) to build on existing knowledge, to refine habitat strategies, and to help prioritize restoration opportunities on non-federal lands in the watershed. a. USBWP Technical Team and others will use the results of tasks 1a-c, EDT and/or MIKE-11other appropriate models to predict habitat trends, future conditions, and the relative benefits of varied habitat strategies and measures. 5 $11,000
2. b. A temperature model of the mainstem Salmon River will be applied to address the severe concerns of some USBWP Technical Team members about the high and low temperature extremes in the river. 2 $30,000 Yes
2. c. USBWP Advisory Committee will work collaboratively with the Technical Team to prioritize available restoration opportunities in a way consistent with the Basinwide Salmon Recovery Strategy and Subbasin Summary and Assessment. 5 $3,000
3. Complete project designs for selected restoration opportunities, by working closely with landowners, local community and agencies. a. Use Mike-11 and/or other physical models where appropriate to predict future conditions and refine project designs. 4 $10,000 Yes
3. b. Complete preliminary engineering and design work for projects. 5 $4,000
3. c. USBWP Biologist will contribute information the Environmental Compliance Specialist (funded under BPA Contract 1992-026-03) needs to complete written biological assessments. 5 $500
3. d. USBWP Biologist will assist the Environmental Compliance Specialist in conducting environmental surveys and completing associated documents (NEPA, HAZMAT). 5 $500
3. e. USBWP Biologist will help a cultural resources specialist assess potential project impacts and assure design adjustments where appropriate. 5 $500
3. f. Prepare final design packages. 5 $5,500
3. g. USBWP Biologist will assist the Environmental Compliance Specialist in obtaining needed permits. 5 $500
3 h. USBWP Biologist and Engineer will help the Environmental Compliance Specialist assemble information needed to procure appraisals for acquisition of fee titles or easements. 5 $500
4 Quantify benefits at the watershed scale - particularly related to temperature and fine sediments a: Identify major causes and locations of thermal gains (adjust monitoring as necessary). 2 $2,500 Yes
4 b. Identify sources and sinks of fine sediment through study reach 2 $2,500 Yes
4 c: Extend hydrodynamic model to include temperature 1 $2,500 Yes
4 d: Estimate local and watershed temperature benefits for different restoration strategies 2 $2,500 Yes
5. Obtain permits and agency approvals a: Submit stream alteration permit to US Army Corps of Engineers and Idaho Department of Water Resources 5 $1,000
5 b: Consult as necessary for ESA species 5 $1,000
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. UpdateDatabase for Design and Adaptive management of the Twelvemile Reach 2003 2006 $40,000
2. Use available predictive or other tools (including EDT and others) to build on existing knowledge, to refine habitat strategies, and to help prioritize restoration opportunities on non-federal lands in the study reach 2003 2004 $25,000
3. Complete project designs for selected restoration opportunities, by working closely with landowners, local community and agencies. 2003 2004 $50,000
4. Prioritize habitat actions (projects) based on predictive tools, and the subbasin assessment and plan for the Twelvemile Reach. 2003 2006 $20,000
5. Obtain permits and agency approvals 2003 2006 $5,000
Outyear budgets for Planning and Design phase
FY 2006FY 2003FY 2004FY 2005
$35,000$35,000$35,000$35,000

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Implementation and restoration and bank stabilization work on 12 mile section of Salmon River a. Develop alternative management practices which include fencing riparian areas. 5 $1,000
1. b. Complete final engineering documents for major biostabilization sections of channel 5 $4,000
1. c. Construct biostabilization elements. 5 $1,000
1. d. Reduce/remove selected dikes and levees 5 $500
1. e. Remove riprap/concrete blocks/construction debris in selected locations to promote natural meandering tendencies and allow vegetated banks 5 $500
2. Restore meadow and riparian plant communities a. Collect and/or grow plant material. 5 $30,000 Yes
2. b. Plant native riparian seedlings or poles in areas slow to respond to other management changes. 5 $20,000 Yes
2. c. Install erosion control fabric and/or seed 5 $10,000 Yes
3. Allocate critical conservation/access easements a. Work with landowners to develop easements - to allow river to naturally recapture its meandering planform and restore floodplain function 5 $1,000
3. b: Acquire easements and fee titles from willing landowners, for long-term habitat protection 5 $1,575,000
4. Oversee contractors during construction projects. a. Conduct ongoing engineering inspections. 5 $2,000
4. b. Complete final engineering inspection and sign off on completed work. 5 $2,000
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Implementation and restoration and bank stabilization work on 12 mile section of Salmon River 2003 2006 $28,000
2. Restore meadow and riparian plant communities 2003 2006 $240,000
3. Allocate critical conservation/access easements 2003 2006 $6,304,000
4. Oversee contractors during construction projects. 2003 2006 $16,000
Outyear budgets for Construction and Implementation phase
FY 2003FY 2004FY 2005FY 2006
$1,647,000$1,647,000$1,647,000$1,647,000

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Use an adaptive management approach to protect investments directed toward habitat restoration and to ensure that restoration objectives are achieved. a. Review annual M&E results (see Task 3a) and identify necessary actions. 5 $2,000
1. b. Modify project approaches and/or design criteria as needed to improve effectiveness. 5 $1,500
1. c: Management and/or replant vegetation as necessary 5 $20,000 Yes
1 d. Maintain access roads as necessary 5 $5,000 Yes
1 e. Repair wildlife/stock exclusion areas 5 $5,000 Yes
f. Perform any adaptive management actions identified by monitoring program and approved by Watershed Advisory Group 5 $5,000
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Use an adaptive management approach to protect investments directed toward habitat restoration and to ensure that restoration objectives are achieved. 2003 2006 $154,000
Outyear budgets for Operations and Maintenance phase
FY 2003FY 2004FY 2005FY 2006
$38,500$38,500$38,500$38,500

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Implementation Monitoring. Ensure biostabilization and other activities are constructed as intended by Watershed Group and permit conditions are met. a: Collect short-term monitoring data including as-built surveys, construction related turbidity and Watershed Group field reviews. 5 $3,000 Yes
1. b. Document and analyze implementation (short-term) monitoring data 5 $1,000
2: Effectiveness Monitoring. Evaluate the performance of features to restore stream channel and floodplain function, enhance fish and wildlife habitat and reestablish indigenous native riparian plant communities a. Refine long-term monitoring program for completeness and cost-effectiveness 5 $1,000
2. b. Collect longterm monitoring data to measure sediment balance, bank erosion, substrate, temperature, vegetative canopy, other fish habitat metrics, floodplain and wetland function. 5 $36,000 Yes
2 c. Compile, analyze and report longterm monitoring data. 5 $4,000 Yes
2 d. Feedback to future design phases through adaptive management 5 $500 Yes
2 e. Summary of information and experiences to provide guidelines for other projects in the Upper Salmon Basin. 5 $500 Yes
3. . Review and recommendations – implementation of adaptive management in the design, implementation and post-construction phases a. Evaluate monitoring data annually and recommend appropriate refinements to USBWP predictive tools, restoration priorities, and programs. Summarize these evaluations and resultant recommendations in a written report every year. 5 $11,500 Yes
3. b. Post annual monitoring report to the website. 5 $5,000 Yes
3 c. A pre-construction field tour and review of the monitoring program will be organized in March. 5 $500 Yes
3 d. A post flood and post-construction field tour will be conducted in October. Field tours are open to the Watershed group and all interested parties. 5 $500 Yes
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Implement the monitoring program. 2003 2006 $16,000
2. Effectiveness monitoring 2003 2006 $168,000
3. Review, evaluation and recommendations 2003 2006 $70,000
Outyear budgets for Monitoring and Evaluation phase
FY 2003FY 2004FY 2005FY 2006
$63,500$63,500$63,500$63,500

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 0.25 Biologist @ $43,139/year, 0.5 Engineer @ $47,174/year, 0.07 Office Manager @ $20,800/year $48,630
Fringe 36.9% $17,944
Supplies Computer, office supplies, field equipment, etc. $8,905
Travel Vehicle lease, insurance, per diem, etc. $3,230
Indirect 5% (applied to all cost elements) $307
Capital $1,500,000
NEPA $20,000
Subcontractor Ecohydraulics Research Lab, University of Idaho $100,811
Subcontractor Clearwater BioStudies, Inc. (C. Huntington; 160 hr @ $50/hr; $3,200 direct expenses) $11,200
Subcontractor US Army Corps of Engineers $0
Subcontractor Survey Firm $45,000
Other Staff Training District Administrative O/H [5%] $0
$1,756,027
Total estimated budget
Total FY 2002 cost$1,756,027
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$1,756,027
FY 2002 forecast from 2001$275,000
% change from forecast538.6%
Reason for change in estimated budget

Program is being restructured to make adaptive management more explicit and for consistency with new federal agency plans. Additional costs associated with potential acquisition of conservation easements or fee title. In addition the monitoring program will be expanded.

Reason for change in scope

Program is being restructured to make adaptive management more explicit and for consistency with new federal agency plans.

Cost sharing
OrganizationItem or service providedAmountCash or in-kind
US COE 65-35 cost share on project (estimate) $600,000 in-kind
US COE as above $0 cash
NRCS Technical and engineering assistance $5,000 in-kind
IDFG Fisheries Biologist $10,000 in-kind
Sho-Ban Tribes Fisheries Biologist (Tech. Team member) $5,000 in-kind
ISCC Tech. Team member $0 in-kind
UI Computer Support and Field Equipment $10,000 in-kind

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Sep 28, 2001

Comment:

A response is needed. The response should clarify the priority of this reach for this level of restoration activity. A watershed assessment should indicate the priority of this effort. For example, if high stream temperature generated upstream is the key limiting factor, this project is likely secondary in priority. Is this the critical reach that needs to be restored at this time? Or, is this a unique, time-limited opportunity to protect fish habitat in this reach of private land?

This section of the Salmon is indeed a problem, and is little used for summer rearing. However, the cause may be because of water temperature. Riparian improvement would be a good thing to do, but because of the width of stream and potentially relatively warm water entering from above that is also exposed to warming through a rocky reach, reviewers were cautious regarding the efficacy of the expensive, heavily engineered approach proposed. Stream temperature modeling should be used to assess if habitat changes as proposed could significantly reduce summer temperature of water to within the range acceptable to salmonids.

No data on fish are presented. Instead this is described as a holistic project. As in the Red River meadow project (Clearwater subbasin), the lack of ties actually made to fish habitat and production should be rectified.

Detailed plans must be given (or referenced) for monitoring and evaluation. Plans for construction should be reviewed by an independent engineering group before final funding.

This is a long rambling complicated proposal that is difficult to review from a scientific and technical point of view. The bottom line in the previous FY00 review by the ISRP was that "....we focus primarily on the scientific and technical merits of proposed projects. It goes against the ISRP's Congressionally-mandated directives and good scientific common sense to recommend advancement of projects for funding that do not have a master plan (or its equivalent) in place that define critical elements of project planning, experimental design, and monitoring and evaluation."

In the current proposal, the proponents indicate that studies of the geomorphology of the reach, completed during the past two years, have documented the recent changes and problems associated with local stabilization projects. It is also stated that "The Walla Walla District Corps of Engineers is conducting a Feasibility Study under Section 206, Aquatic Ecosystem Restoration on the 12 mile reach of the Salmon River near Challis, Idaho." ..."The feasibility portion of this project is expected to be completed in late winter of 2002 with construction beginning during the summer of 2002. Construction is likely to occur over the course of several years as different landowners become partners." As in the FY00 review, if this proposal is funded it is necessary to take much of it on faith that the program is technically sound and will have biological benefits.

The proponents indicate that some monitoring data are available. Simple graphs or tables presenting past results should be included in the proposal. Monitoring and evaluation is proposed, but in very general terms. Details on exactly what variables are to be measured and what methods are to be used must be included or references given to published documentation. A good model to be used for detailing monitoring and evaluation plans is contained in Proposal #28016.

There are aspects of the proposed budget that appear to be inconsistent for the 2003 out year costs of obtaining critical conservation/access easements.


Recommendation:
High Priority
Date:
Nov 30, 2001

Comment:

Addresses RPA 149 and 152. Similar to the ISRP's review, the CBFWA reviewed Proposals 28036, 28037, 28038, 28039, 28040 and 199901900 as a collection of proposals. These budgets are a significant portion of the total Salmon subbasin budget and need additional scrutiny. The reviewers and project sponsors are in agreement with the ISRP regarding the need for the development of a well-defined watershed assessment; however the managers expressed concern that landowner support could be lost if additional planning efforts were required during the next couple of years at the expense of implementation. Recognizing that nearly 90% of the spawning activities occur on private lands, the managers realize landowner participation is essential to the management and conservation of the resources. As a result, the managers have spent over a decade developing working relationships with private landowners through extensive planning processes. Based on their working relationships with the landowners, the managers indicated that requiring the development of assessments prior to implementing actions that have already been discussed/planned with the landowners will result in the loss of public support and subsequently the inability to manage the areas that have been identified as critical through a decade of planning.

Although the proposals have new project numbers they are ongoing projects (i.e., 199401700, 199306200 19960700). The BPA COTR, who was present during the review, indicates that these proposals are not characterized by a change of scope, however there was significant disagreement with this statement. Although the tasks are considered a high priority, there is concern among CBFWA reviewers about the size of the proposed budgets and the ability to implement actions at the proposed rate. In each proposal the same writing contractor and the University of Idaho is identified. Are the U of I employees separate individuals for each project? Baseline M&E (i.e., juvenile counts and redd counts since 1998 and physical data collection since 1985) data is being collected through IDFG activities Detailed M&E plans have not been developed to date but will be developed as the project moves forward. Data collected to date show that rearing populations are higher then elsewhere and that by opening the side-channels the population will greatly benefit. The sponsor understands a watershed assessment is important and indicated that other agencies are working towards performing the activity. Considering the magnitude of implementation proposed, the sponsor should seek CREP implementation funding as cost share as has been done by similar SWCD proposals in the Columbia Plateau Province.


Recommendation:
Fund
Date:
Dec 21, 2001

Comment:

Fundable in part for study of the importance of temperature as the potential limiting factor in the proposed study reach and to pursue passive activities such as purchase of priority easements and fencing projects. Temperature modeling similar to that alluded to in items 5 & 6 of the response, as well as additional physical and biological watershed assessment, will be crucial in assessing potential benefits of the project, including components of the heavy construction work.

It is clear that the agencies involved have indeed done a nice job in getting local landowners poised to "collaborate on a single vision and to consider the reach in a holistic sense". Unfortunately, it is not clear to the ISRP that enhancement of anadromous fish populations will necessarily follow from all of the tasks.

A watershed assessment should indicate the priorities of tasks in this project. For example, if high stream temperature generated upstream is the key limiting factor, the heavily engineered approach proposed in project may be secondary in priority. Evidence that this reach provides a number of high quality thermal refuges and assessment of the potential to provide more should be given.

The proponents are referred to the programmatic section of this report on Monitoring, the specific comments on Aquatic Monitoring and Evaluation, and the specific comments on Terrestrial Monitoring and Evaluation.


Recommendation:
Date:
Feb 1, 2002

Comment:

Statement of Potential Biological Benefit to ESU
May increase survival by improvement of habitat through the reduction of sediment and water temperature, increasing riparian vegetation, removal of areas from grazing, and provide adequate instream flows

Comments
There appears to be interest from a number of local landowners in participating in this project. It has the benefit of a cost-share with the Army Corps of Engineers, but is also very expensive. 85% of the FY2002 funds ($1,844,000) are allocated to purchasing fee titles from willing landowners, although these are not identified. Subsequent outyear budgets have increased expectations for purchasing fee titles. Do the likely benefits justify the cost?

Already ESA Req? No

Biop? Yes


Recommendation:
A Conditional
Date:
Feb 11, 2002

Comment:

Recommend funding only permanent easement, fencing, and temperature study objectives of this project for implementation of RPAs 152 and 153.

BPA RPA RPM:
152, 153

NMFS RPA/USFWS RPM:
149, 152


Recommendation:
Fund
Date:
Apr 19, 2002

Comment:

Council recommendation: The ISRP provided a "fundable in part" recommendation for the study of the importance of temperature as the potential limiting factor in the proposed study reach and to pursue passive activities such as purchase of priority easements and fencing projects. The Council recommends funding this ongoing work at the levels presented in Table 1, which is substantially reduced from the sponsor's request.

The sponsor has responded to the Council's general funding level guidance and adjusted its budget to reflect Fiscal Year 2001 level, plus 3.4%. Though this project is located in the Upper Salmon, it is dependent on a 65% cost share from the U.S. Army Corps of Engineers. Tracking the cost share funding would be extremely difficult if funds were intermingled with the Upper Salmon Basin Watershed Project budget (see above), so the Council recommends that it be dealt with separately. Although the Upper Salmon Basin Watershed Project office has provided some level of support through various members of the Watershed Technical Team and most recently time dedicated from an USBWP Planner, administrative support and project management has been provided through the Custer Soil and Water Conservation District Office. This Project Budget cannot be merged with the other Upper Salmon Basin Watershed Project Budgets.

Bonneville provided a "A conditional" for this project, supporting the same sort of passive habitat restoration activities that it supported for the other Upper Salmon River SWCD proposals. The Council recommendation is consistent with Bonneville's comments.


Recommendation:
Fund
Date:
Jun 13, 2002

Comment:

"Fund to implement RPA's 152 and 153."
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

Progress delayed. Acquisitions on hold. Support still high. Sponsor rolled costs forward- projects (several parcels) ready to go in 04. Issue #4 from issue paper. COE still holding cost share. More detail available
Recommendation:
Date:
Sep 20, 2003

Comment:

Details of project description and expensed can be provided to Council on request. US Army Corp is providing 65% cost share for the project.
REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$359,290 $170,000 $170,000

Sponsor comments: See comment at Council's website